In this paper, we propose an improvement of the adaptive biasing force (ABF) method, by projecting the estimated mean force onto a gradient. We show on some numerical examples that the variance of the approximated mean force is reduced using this technique, which makes the algorithm more efficient than the standard ABF method. The associated stochastic process satisfies a nonlinear stochastic differential equation. Using entropy techniques, we prove exponential convergence to the stationary state of this stochastic process.
@article{SMAI-JCM_2015__1__55_0, author = {Alrachid, Houssam and Leli\`evre, Tony}, title = {Long-time convergence of an adaptive biasing force method: Variance reduction by Helmholtz projection}, journal = {Journal of computational mathematics}, volume = {1}, year = {2015}, pages = {55-82}, doi = {10.5802/smai-jcm.4}, language = {en}, url = {http://dml.mathdoc.fr/item/SMAI-JCM_2015__1__55_0} }
Alrachid, Houssam; Lelièvre, Tony. Long-time convergence of an adaptive biasing force method: Variance reduction by Helmholtz projection. Journal of computational mathematics, Tome 1 (2015) pp. 55-82. doi : 10.5802/smai-jcm.4. http://gdmltest.u-ga.fr/item/SMAI-JCM_2015__1__55_0/
[1] Sur les inégalités de Sobolev logarithmiques, Société Mathématiques de France (in French) (2000) | Zbl 0982.46026
[2] On convex Sobolev inequalities and the rate of convergence to equilibrium for Fokker-Planck type equations, Comm. Partial Differential Equations, Tome 26 (2001) no. 1-2, pp. 43-100 | Article | MR 1842428 | Zbl 0982.35113
[3] Equilibrium free energies from nonequilibrium metadynamics, Physical review letters, Tome 96 (2006) no. 9, pp. 090601 | Article
[4] Free energy calculations, Springer (2007)
[5] Calculating free energies using average force, The Journal of Chemical Physics, Tome 115 (2001) no. 20, pp. 9169-9183 | Article
[6] Finite element methods for Navier-Stokes equations: theory and algorithms, vol. 5 of Springer Series in Computational Mathematics, Springer-Verlag, Berlin, New-York (1986) | MR 851383 | Zbl 0585.65077
[7] Overcoming free energy barriers using unconstrained molecular dynamics simulations, J. Chem. Phys, Tome 121 (2004), pp. 2904-2914 | Article
[8] Computation of free energy profiles with parallel adaptive dynamics, The Journal of chemical physics, Tome 126 (2007) no. 13, pp. 134111 | Article
[9] Long-time convergence of an adaptive biasing force method, Nonlinearity, Tome 21 (2008) no. 6, pp. 1155 | Article | MR 2422373 | Zbl 1146.35320
[10] Free energy computations: A mathematical perspective, World Scientific (2010) | MR 2681239 | Zbl 1227.82002
[11] Generalization of an inequality by Talagrand and links with the logarithmic Sobolev inequality, Journal of Functional Analysis, Tome 173 (2000) no. 2, pp. 361-400 | Article | MR 1760620 | Zbl 0985.58019
[12] The art of molecular dynamics simulation, Cambridge university press (2004) | Zbl 1098.81009
[13] Topics in optimal transportation, American Mathematical Society, Providence, RI, Graduate Studies in Mathematics, Tome 58 (2003), pp. xvi+370 | Article | MR 1964483 | Zbl 1106.90001
[14] Determining the density of states for classical statistical models: A random walk algorithm to produce a flat histogram, Physical Review E, Tome 64 (2001) no. 5, pp. 056101 | Article