Spaced Seeds for Cross-species CDNA-to-genome Sequence Alignment
Zhou, Leming ; Mihai, Ingrid ; Florea, Liliana
Commun. Inf. Syst., Tome 10 (2010) no. 2, p. 115-136 / Harvested from Project Euclid
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We review recent developments in spaced seed design for cross-species sequence alignment. We start with a brief overview of original ideas and early techniques, and then focus on more recent work on finding accurate (sensitive and specific) seeds for cross-species cDNA-to-genome alignment. These recent developments include methods and models for estimating seed specificity and determining sensitive and specific seeds, finding seeds that can be applied to a wide range of comparisons, and applying seed models to other computational biology areas, such as gene finding.
Publié le : 2010-05-15
Classification:  cDNA,  genome,  spaced seeds,  Markov model 
@article{1268143267,
     author = {Zhou, Leming and Mihai, Ingrid and Florea, Liliana},
     title = {Spaced Seeds for Cross-species CDNA-to-genome Sequence Alignment},
     journal = {Commun. Inf. Syst.},
     volume = {10},
     number = {2},
     year = {2010},
     pages = { 115-136},
     language = {en},
     url = {http://dml.mathdoc.fr/item/1268143267}
}

Zhou, Leming; Mihai, Ingrid; Florea, Liliana. Spaced Seeds for Cross-species CDNA-to-genome Sequence Alignment. Commun. Inf. Syst., Tome 10 (2010) no. 2, pp.  115-136. http://gdmltest.u-ga.fr/item/1268143267/